Soon

hub

db

usecases

• :lipstick: Polish Arc Atlas tutorial PR @falexwolf

• 🎨 Add test to Arc and run atlases group without authentication PR @falexwolf

• ♻️ Simplify the Arc guide PR @falexwolf

• 📝 Fix typo in arc tutorial PR @sunnyosun

• ♻️ Start running the curation notebook again PR @falexwolf

• 👷 Re-enable running the sc-imaging guide on CI PR @falexwolf

• :recycle: More robust execution strategy PR @falexwolf

• ✨ Add DNA methylation usecase PR @sheetalgiri

• 💚 Fix CI by upgrading gseapy PR @Koncopd

• :sparkles: Add the laminated Scanpy pbmc3k tutorial PR @sheetalgiri

• Modify Artifact dataframe features in spatial3.md PR @falexwolf

• ♻️ Reflect overhauled lightning integration PR @falexwolf

• :bug: Make the cellxgene registration workflow more robust PR @ishitajain9717

• 💚 Fix CI PR @Koncopd

• 🚸 No need for a LaminDB instance just to query PR @falexwolf

• :bento: Support CELLxGENE 7.0.0 PR @Zethson

• 📝 Select the latest versions in docs PR @Koncopd

• 🎨 Fix formatting in the spatial guide PR @namsaraeva

• 💚 Remove scanpy pinning PR @namsaraeva

• 💚 Standardize against pinned Sources PR @Zethson

• 👷 Clean up repo PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• ♻️ Convert ipynb to md PR @falexwolf

• 📝 Update guides to reflect the overhauled lightning integration PR @Zethson

• 📝 Re-polish ontology guides PR @Zethson

• ♻️ Simplify and clarify usage of @ln.flow() PR @falexwolf

• 🐛 Fix _set_default_colors_for_categorical_obs for the spatial guide PR @namsaraeva

• 👷 Polish repo setup PR @falexwolf

• 🚚 Rename wetlab to pertdb PR @sunnyosun

• 📝 Polish 3 “Leverage ontologies” guides and the gene guide PR @sunnyosun

• 💚 Fix extras PR @Koncopd

• 💚 Fix CI PR @sunnyosun

• 🏗️ Use _dtype_str rather than dtype PR @falexwolf

• 💚 Use zarr_v2 extra PR @Koncopd

• 📝 Fix errors and outdated code in cellxgene guide PR @sunnyosun

• 📝 Overhaul the spatialdata guide PR @namsaraeva

• 💚 Fix CI PR @sunnyosun

• ♻️ Rename QueryDB to DB and arc_db to db PR @falexwolf

• 📝 Rename QueryDB to DB and cxg_db to db PR @falexwolf

• 📝 Simplify CELLxGENE guide PR @Zethson

• ♻️ New QueryDB syntax PR @Zethson

• ♻️ New QueryDB syntax PR @Zethson

• ♻️ Migrate to new QueryDB syntax PR @Zethson

• ♻️ Migrate to new QueryDB syntax PR @Zethson

• ✨ Adopt QueryDB PR @Zethson

• ✨ Adopt QueryDB for Arc & HubMAP PR @Zethson

• Update notebook link and dataset description in spatial4 PR @namsaraeva

• ♻️ Migrate scrna2 to schema-based curator and simplify heavily PR @falexwolf

• 🚚 Rename .using() to .connect() PR @falexwolf

• Fix pyarrow pin PR @Zethson

• 📌Pin pyarrow to 0.21.0 PR @Zethson

• Remove hide output from code cell in sc-imaging4 PR @namsaraeva

• ⬇️ Pin pyarrow PR @Zethson

• ⬇️ Pin pyarrow for spatial imaging PR @Zethson

• 💚 Fix test environments 2 PR @Koncopd

• 💚 Fix test environments PR @Koncopd

• 🔥 Remove analysis-flow use case PR @falexwolf

• 🚚 Rename df() to to_dataframe() PR @falexwolf

• 🚚 Rename .df() to .to_dataframe() PR @falexwolf

• ♻️ Move arc-virtual-cell-atlas and hubmap notebook here PR @falexwolf

• ♻️ Canonicalize import patterns PR @falexwolf

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