Soon
ΒΆ
hubΒΆ
dbΒΆ
usecasesΒΆ
:lipstick: Polish Arc Atlas tutorial PR @falexwolf
π¨ Add test to Arc and run atlases group without authentication PR @falexwolf
β»οΈ Simplify the Arc guide PR @falexwolf
π Fix typo in arc tutorial PR @sunnyosun
β»οΈ Start running the curation notebook again PR @falexwolf
π· Re-enable running the
sc-imagingguide on CI PR @falexwolf:recycle: More robust execution strategy PR @falexwolf
β¨ Add DNA methylation usecase PR @sheetalgiri
:sparkles: Add the laminated Scanpy
pbmc3ktutorial PR @sheetalgiriModify Artifact dataframe features in spatial3.md PR @falexwolf
β»οΈ Reflect overhauled lightning integration PR @falexwolf
:bug: Make the cellxgene registration workflow more robust PR @ishitajain9717
πΈ No need for a LaminDB instance just to query PR @falexwolf
π¨ Fix formatting in the spatial guide PR @namsaraeva
π Remove scanpy pinning PR @namsaraeva
π· Clean up repo PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
β»οΈ Convert ipynb to md PR @falexwolf
π Update guides to reflect the overhauled
lightningintegration PR @Zethsonβ»οΈ Simplify and clarify usage of
@ln.flow()PR @falexwolfπ Fix
_set_default_colors_for_categorical_obsfor the spatial guide PR @namsaraevaπ· Polish repo setup PR @falexwolf
π Rename wetlab to pertdb PR @sunnyosun
π Polish 3 βLeverage ontologiesβ guides and the
geneguide PR @sunnyosunπ Fix CI PR @sunnyosun
ποΈ Use
_dtype_strrather thandtypePR @falexwolfπ Fix errors and outdated code in cellxgene guide PR @sunnyosun
π Overhaul the
spatialdataguide PR @namsaraevaπ Fix CI PR @sunnyosun
β»οΈ Rename QueryDB to DB and arc_db to db PR @falexwolf
π Rename
QueryDBtoDBandcxg_dbtodbPR @falexwolfUpdate notebook link and dataset description in spatial4 PR @namsaraeva
β»οΈ Migrate
scrna2to schema-based curator and simplify heavily PR @falexwolfπ Rename
.using()to.connect()PR @falexwolfRemove hide output from code cell in sc-imaging4 PR @namsaraeva
π₯ Remove
analysis-flowuse case PR @falexwolfπ Rename
df()toto_dataframe()PR @falexwolfπ Rename
.df()to.to_dataframe()PR @falexwolfβ»οΈ Move
arc-virtual-cell-atlasandhubmapnotebook here PR @falexwolfβ»οΈ Canonicalize import patterns PR @falexwolf