SoonΒΆ
hubΒΆ
dbΒΆ
π Move
lamin cacheCLI command to belamin settings cache-dirPR @falexwolfβ»οΈ More consistent switch and create commands PR @falexwolf
β»οΈ Make
lamin deleteparallel tolamin saveandlamin loadin that it also allowskey-based deletion PR @falexwolfβ»οΈ Clearer delineation of entity vs. registry PR @falexwolf
π More consistent docstrings for CLI commands PR @falexwolf
π Move
lamin cacheCLI command to belamin settings cache-dirand adopt the same pattern for other settings PR @falexwolfπ Refactor & fix feature-based queries for records and expand tests PR @falexwolf
β»οΈ Enable memorizing the global run context of a flow PR @falexwolf
πΈ Default to creating a global run context in
ln.flow()PR @falexwolfπ Improve the
Artifact.open()docs PR @falexwolfπΈ Check local path existence on
artifact.save()PR @Koncopdπ Fix white-space formatting in tests for new Rich behavior PR @Zethson
π README v5.2 PR @falexwolf
usecasesΒΆ
β»οΈ Simplify and clarify usage of
@ln.flow()PR @falexwolfπ Fix
_set_default_colors_for_categorical_obsfor the spatial guide PR @namsaraevaπ· Polish repo setup PR @falexwolf
π Rename wetlab to pertdb PR @sunnyosun
π Polish 3 βLeverage ontologiesβ guides and the
geneguide PR @sunnyosunπ Fix CI PR @sunnyosun
ποΈ Use
_dtype_strrather thandtypePR @falexwolfπ Fix errors and outdated code in cellxgene guide PR @sunnyosun
π Overhaul the
spatialdataguide PR @namsaraevaπ Fix CI PR @sunnyosun
β»οΈ Rename QueryDB to DB and arc_db to db PR @falexwolf
π Rename
QueryDBtoDBandcxg_dbtodbPR @falexwolfUpdate notebook link and dataset description in spatial4 PR @namsaraeva
β»οΈ Migrate
scrna2to schema-based curator and simplify heavily PR @falexwolfπ Rename
.using()to.connect()PR @falexwolfRemove hide output from code cell in sc-imaging4 PR @namsaraeva
π₯ Remove
analysis-flowuse case PR @falexwolfπ Rename
df()toto_dataframe()PR @falexwolfπ Rename
.df()to.to_dataframe()PR @falexwolfβ»οΈ Move
arc-virtual-cell-atlasandhubmapnotebook here PR @falexwolfβ»οΈ Canonicalize import patterns PR @falexwolf