Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W A aaggregate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) abbr (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (lamindb.Project attribute) (lamindb.Reference attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) ablocks (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) absolute() (lamindb.UPath method) abulk_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) abulk_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) access_token (lamindb.setup.core.UserSettings attribute) acontains() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) acount() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) acreate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) add() (lamindb.models.LabelManager method) (lamindb.models.SchemaOptionals method) add_column() (lamindb.core.storage.AnnDataAccessor method) add_from() (lamindb.models.LabelManager method) add_new() (lamindb.curators.core.CatVector method) add_new_from() (lamindb.curators.core.DataFrameCatManager method) add_optional_features() (lamindb.Schema method) add_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.models.HasSource class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) add_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) add_values() (lamindb.models.FeatureManager method) aearliest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aexists() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aexplain() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) afirst() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aget() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aget_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aggregate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ain_bulk() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aiterator() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alast() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alatest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) alias() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) all() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) anchor (lamindb.UPath property) anndata_ensembl_gene_ids_and_valid_features_in_obs() (in module lamindb.examples.schemas) anndata_file_pbmc68k_test() (in module lamindb.examples.datasets) anndata_human_immune_cells() (in module lamindb.examples.datasets) anndata_mouse_sc_lymph_node() (in module lamindb.examples.datasets) anndata_pbmc3k_processed() (in module lamindb.examples.datasets) anndata_pbmc68k_reduced() (in module lamindb.examples.datasets) anndata_suo22_Visium10X() (in module lamindb.examples.datasets) anndata_with_obs() (in module lamindb.examples.datasets), [1] AnnDataAccessor (class in lamindb.core.storage) AnnDataCurator (class in lamindb.curators) annotate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) annotation (lamindb.core.Settings property) AnnotationSettings (class in lamindb.core.subsettings) api_key (lamindb.setup.core.UserSettings attribute) api_url (lamindb.setup.core.InstanceSettings property) append() (lamindb.Collection method) (lamindb.models.SQLRecordList method) array_rank (lamindb.Feature attribute) array_shape (lamindb.Feature attribute) array_size (lamindb.Feature attribute) artifact Artifact (class in lamindb) (lamindb.DB attribute) artifact (lamindb.models.ArtifactArtifact attribute) (lamindb.models.ArtifactBlock attribute) artifact_silence_missing_run_warning (lamindb.core.subsettings.CreationSettings attribute) artifact_skip_size_hash (lamindb.core.subsettings.CreationSettings attribute) ArtifactArtifact (class in lamindb.models) ArtifactBlock (class in lamindb.models) ArtifactKind (in module lamindb.base.types) artifacts (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.JsonValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) ArtifactSet (class in lamindb.models) as_manager() (lamindb.models.BasicQuerySet class method) (lamindb.models.QuerySet class method) as_posix() (lamindb.UPath method) as_uri() (lamindb.UPath method) aupdate() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) aupdate_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) auto_connect (lamindb.setup.core.SetupSettings property) auto_created (lamindb.models.QueryManager attribute) available_spaces (lamindb.setup.core.InstanceSettings property) B BackedAccessor (class in lamindb.core.storage) base26() (in module lamindb.base.uids) base62() (in module lamindb.base.uids) base62_12() (in module lamindb.base.uids) base62_16() (in module lamindb.base.uids) base62_20() (in module lamindb.base.uids) base62_8() (in module lamindb.base.uids) base64() (in module lamindb.base.uids) BaseSQLRecord (class in lamindb.models) BasicQuerySet (class in lamindb.models) BFXPipeline (class in bionty.base) BigIntegerField (class in lamindb.base.fields) BinaryField (class in lamindb.base.fields) Biologic (class in pertdb) BiologicType (in module pertdb) bionty module bionty (lamindb.DB attribute) bionty.base module bionty.core module bionty.models module bionty.uids module BiontyDB (class in lamindb.models.query_set) BioRecord (class in bionty.core) (class in bionty.models) BioSample (class in bionty.base) biotype (bionty.Gene attribute) BlobHashNotFound Block (class in lamindb.models) blocks (lamindb.Project attribute) BooleanField (class in lamindb.base.fields) branch (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Branch (class in lamindb) branch (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) Branch (lamindb.DB attribute) branch (lamindb.Feature attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.JsonValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.SetupSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) BranchBlock (class in lamindb.models) bulk_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) bulk_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) C cache() (lamindb.Artifact method) (lamindb.Collection method) cache_dir (lamindb.core.Settings property) (lamindb.setup.core.SetupSettings property) (lamindb.setup.core.StorageSettings property) Callback (class in lamindb.integrations.lightning) CanCurate (class in lamindb.models) CannotSwitchDefaultInstance canonical_smiles (pertdb.Compound attribute) cat (lamindb.curators.core.ComponentCurator property) (lamindb.curators.DataFrameCurator property) categoricals (lamindb.curators.core.DataFrameCatManager property) CatLookup (class in lamindb.curators.core) CatVector (class in lamindb.curators.core) CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) CellType (class in bionty) (class in bionty.base) CharField (class in lamindb.base.fields) check() (lamindb.models.QueryManager method) check_dtype() (in module lamindb.base.dtypes) check_vars_non_aligned() (lamindb.core.MappedCollection method) check_vars_sorted() (lamindb.core.MappedCollection method) chembl_id (pertdb.Compound attribute) children (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.ULabel attribute) chmod() (lamindb.UPath method) class_and_instance_method() (in module lamindb.base.utils) clear() (lamindb.models.SQLRecordList method) cli_args (lamindb.Run attribute) close() (lamindb.core.MappedCollection method) (lamindb.core.storage.AnnDataAccessor method) closed (lamindb.core.MappedCollection property) (lamindb.core.storage.AnnDataAccessor property) cloud_to_local() (lamindb.setup.core.StorageSettings method) cloud_to_local_no_update() (lamindb.setup.core.StorageSettings method) coerce (lamindb.Feature attribute) (lamindb.Schema attribute) Collection (class in lamindb) (lamindb.DB attribute) collection (lamindb.models.CollectionBlock attribute) CollectionBlock (class in lamindb.models) collections (lamindb.Artifact attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) CombinationPerturbation (class in pertdb) complex_filter() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ComponentCurator (class in lamindb.curators.core) components (lamindb.Schema attribute) composites (lamindb.Schema attribute) Compound (class in pertdb) compound (pertdb.CompoundPerturbation attribute) compound_perturbations (pertdb.CombinationPerturbation attribute) CompoundPerturbation (class in pertdb) concentration (pertdb.CompoundPerturbation attribute) concentration_unit (pertdb.CompoundPerturbation attribute) connect() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (in module lamindb) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.JsonValue class method) (lamindb.models.ProjectBlock class method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) contains() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) content (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) Context (class in lamindb.core) context (in module lamindb) contribute_to_class() (lamindb.models.QueryManager method) copy() (lamindb.models.SQLRecordList method) count() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.setup.migrate class method) create_cellxgene_schema() (in module lamindb.examples.cellxgene) created_artifacts (lamindb.User attribute) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.ArtifactArtifact attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.JsonValue attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) created_by (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.ArtifactArtifact attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.JsonValue attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TracksRun attribute) (lamindb.models.TransformBlock attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) created_by_id (lamindb.models.TracksRun attribute) created_runs (lamindb.User attribute) created_transforms (lamindb.User attribute) creation (lamindb.core.Settings property) creation_counter (lamindb.models.QueryManager attribute) CreationSettings (class in lamindb.core.subsettings) curate_from_croissant() (in module lamindb.integrations) curator Curator (class in lamindb.curators.core) CurrentInstanceNotConfigured currently_used (bionty.Source attribute) cwd() (lamindb.UPath class method) D data_artifact (lamindb.Collection property) dataframe_artifact (bionty.Source attribute) DataFrameCatManager (class in lamindb.curators.core) DataFrameCurator (class in lamindb.curators) date (lamindb.Reference attribute) DateField (class in lamindb.base.fields) dates() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) DateTimeField (class in lamindb.base.fields) datetimes() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) DB (class in lamindb) db (lamindb.models.BasicQuerySet property) (lamindb.models.QueryManager property) (lamindb.models.QuerySet property) (lamindb.setup.core.InstanceSettings property) db_manager() (lamindb.models.QueryManager method) DecimalField (class in lamindb.base.fields) deconstruct() (lamindb.models.QueryManager method) default_value (lamindb.Feature attribute) defer() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) define_features_labels() (in module lamindb.examples.datasets.mini_immuno) define_mini_immuno_schema_flexible() (in module lamindb.examples.datasets.mini_immuno) defined_migrations() (lamindb.setup.migrate class method) delete() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.models.HasOntologyId method) (bionty.models.HasSource method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (in module lamindb.setup) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.ArtifactArtifact method) (lamindb.models.ArtifactBlock method) (lamindb.models.BaseSQLRecord method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block method) (lamindb.models.BranchBlock method) (lamindb.models.CollectionBlock method) (lamindb.models.HasType method) (lamindb.models.IsVersioned method) (lamindb.models.JsonValue method) (lamindb.models.ProjectBlock method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact method) (lamindb.models.RecordBlock method) (lamindb.models.RecordJson method) (lamindb.models.RecordProject method) (lamindb.models.RecordRecord method) (lamindb.models.RecordReference method) (lamindb.models.RecordRun method) (lamindb.models.RecordULabel method) (lamindb.models.RecordUser method) (lamindb.models.RunBlock method), [1] (lamindb.models.SchemaBlock method) (lamindb.models.SpaceBlock method) (lamindb.models.SQLRecord method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.models.TransformBlock method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) deploy() (lamindb.setup.migrate class method) deployed_migrations() (lamindb.setup.migrate class method) deprecated() (in module lamindb.base.utils) describe() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.FeatureManager method) (lamindb.models.JsonValue class method) (lamindb.models.LabelManager method) (lamindb.models.ProjectBlock class method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) dev_dir (lamindb.setup.core.SetupSettings property) DevelopmentalStage (class in bionty) (class in bionty.base) df (lamindb.models.InspectResult property) df_iris() (in module lamindb.examples.datasets) df_iris_in_meter() (in module lamindb.examples.datasets) df_iris_in_meter_study1() (in module lamindb.examples.datasets) df_iris_in_meter_study2() (in module lamindb.examples.datasets) dialect (lamindb.setup.core.InstanceSettings property) dict_cellxgene_uns() (in module lamindb.examples.datasets) difference() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) dir_iris_images() (in module lamindb.examples.datasets) dir_scrnaseq_cellranger() (in module lamindb.examples.datasets) disconnect() (in module lamindb.setup) Disease (class in bionty) (class in bionty.base) display_currently_used_sources() (in module bionty.base) display_sources() (in module bionty.base) distinct() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) django() (in module lamindb.setup) doc_args() (in module lamindb.base.utils) doi (lamindb.Reference attribute) download_to() (lamindb.UPath method) drive (lamindb.UPath property) Drug (class in bionty.base) dtype (lamindb.Schema property) dtype_as_object (lamindb.Feature property) dtype_as_str (lamindb.Feature property) DtypeStr (in module lamindb.base.types) duration (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) DurationField (class in lamindb.base.fields) E earliest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) email (lamindb.setup.core.UserSettings attribute) EmailField (class in lamindb.base.fields) end_date (lamindb.Project attribute) ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) entrypoint (lamindb.Run attribute) environment (lamindb.Run attribute) (lamindb.Transform attribute) environmental_perturbations (pertdb.CombinationPerturbation attribute) EnvironmentalPerturbation (class in pertdb) Ethnicity (class in bionty) (class in bionty.base) exclude() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) exists() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.UPath method) expanduser() (lamindb.UPath method) ExperimentalFactor (class in bionty) (class in bionty.base) explain() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) extend() (lamindb.models.SQLRecordList method) extra() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) extra_data (lamindb.Record attribute) F FAIR fake_bio_notebook_titles() (in module lamindb.examples.datasets) feature Feature (class in lamindb) (lamindb.DB attribute) feature (lamindb.models.ArtifactArtifact attribute) (lamindb.models.JsonValue attribute) (lamindb.models.RecordArtifact attribute) (lamindb.models.RecordJson attribute) (lamindb.models.RecordProject attribute) (lamindb.models.RecordRecord attribute) (lamindb.models.RecordReference attribute) (lamindb.models.RecordRun attribute) (lamindb.models.RecordULabel attribute) (lamindb.models.RecordUser attribute) FeatureManager (class in lamindb.models) features (lamindb.Artifact property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record property) (lamindb.Run property) (lamindb.Schema attribute) FieldAttr (in module lamindb.base.types) FieldValidationError file_bam() (in module lamindb.examples.datasets) file_fastq() (in module lamindb.examples.datasets) file_fcs() (in module lamindb.examples.datasets) file_fcs_alpert19() (in module lamindb.examples.datasets) file_jpg_paradisi05() (in module lamindb.examples.datasets) file_mini_csv() (in module lamindb.examples.datasets) file_tiff_suo22() (in module lamindb.examples.datasets) file_tsv_rnaseq_nfcore_salmon_merged_gene_counts() (in module lamindb.examples.datasets) FileNotInDevDir filter() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.JsonValue class method) (lamindb.models.ProjectBlock class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) finish() (in module lamindb) finished_at (lamindb.Run attribute) first() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) flexible (lamindb.Schema attribute) FloatField (class in lamindb.base.fields) flow() (in module lamindb) ForeignKey (class in lamindb.base.fields) format_message() (lamindb.setup.errors.StorageNotEmpty method) frac_validated (lamindb.models.InspectResult property) from_anndata() (lamindb.Artifact class method) from_dataframe() (lamindb.Artifact class method) (lamindb.Feature class method) (lamindb.Schema class method) from_dict() (lamindb.Feature class method) from_dir() (lamindb.Artifact class method) from_git() (lamindb.Transform class method) from_lazy() (lamindb.Artifact class method) from_mudata() (lamindb.Artifact class method) from_queryset() (lamindb.models.QueryManager class method) from_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.models.HasSource class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) from_spatialdata() (lamindb.Artifact class method) from_tiledbsoma() (lamindb.Artifact class method) from_values() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.Feature class method) (lamindb.models.CanCurate method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) fs (lamindb.UPath property) G Gene (class in bionty) (class in bionty.base) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) GenericIPAddressField (class in lamindb.base.fields) genes (bionty.Pathway attribute) (pertdb.PerturbationTarget attribute) genetic_perturbations (pertdb.CombinationPerturbation attribute) GeneticPerturbation (class in pertdb) GeneticPerturbationSystem (in module pertdb) get() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact method) (lamindb.Branch class method) (lamindb.Collection method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.JsonValue class method) (lamindb.models.LabelManager method) (lamindb.models.ProjectBlock class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SchemaOptionals method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) get_dataset1() (in module lamindb.examples.datasets.mini_immuno) get_dataset2() (in module lamindb.examples.datasets.mini_immuno) get_label_weights() (lamindb.core.MappedCollection method) get_merged_categories() (lamindb.core.MappedCollection method) get_merged_labels() (lamindb.core.MappedCollection method) get_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.JsonValue class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) get_queryset() (lamindb.models.QueryManager method) get_uids() (lamindb.models.SchemaOptionals method) get_values() (lamindb.models.FeatureManager method) git_repo (lamindb.setup.core.InstanceSettings property) glob() (lamindb.UPath method) group() (lamindb.UPath method) H handle (lamindb.setup.core.UserSettings attribute) (lamindb.User attribute) hardlink_to() (lamindb.UPath method) hash (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.JsonValue attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) HasOntologyId (class in bionty.models) HasParents (class in lamindb.models) HasSource (class in bionty.models) HasType (class in lamindb.models) home() (lamindb.UPath class method) host (lamindb.setup.core.StorageSettings property) (lamindb.Storage property) I id (lamindb.setup.core.UserSettings property) import_source() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.models.HasSource class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) in_bulk() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) in_db (bionty.Source attribute) inchikey (pertdb.Compound attribute) index (lamindb.Schema property) index() (lamindb.models.SQLRecordList method) init() (in module lamindb.setup) initiated_by_run (lamindb.Run attribute) initiated_runs (lamindb.Run attribute) input_artifacts (lamindb.Run attribute) input_collections (lamindb.Run attribute) input_of_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Record attribute) input_records (lamindb.Run attribute) insert() (lamindb.models.SQLRecordList method) inspect() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate method) (lamindb.models.QuerySet method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) InspectResult (class in lamindb.models) instance (lamindb.setup.core.SetupSettings property) instance_uid (lamindb.core.Settings property) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) InstanceLockedException InstanceNotFoundError InstanceSettings (class in lamindb.setup.core) IntegerField (class in lamindb.base.fields) IntegrityError intersection() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) InvalidArgument is_absolute() (lamindb.UPath method) is_block_device() (lamindb.UPath method) is_char_device() (lamindb.UPath method) is_connected (lamindb.setup.core.SetupSettings property) is_dir() (lamindb.UPath method) is_fifo() (lamindb.UPath method) is_file() (lamindb.UPath method) is_junction() (lamindb.UPath method) is_latest (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) (lamindb.Transform attribute) is_locked (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.Block attribute) (lamindb.models.JsonValue attribute) (lamindb.models.SQLRecord attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) is_managed_by_hub (lamindb.setup.core.InstanceSettings property) is_mount() (lamindb.UPath method) is_on_hub (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) is_relative_to() (lamindb.UPath method) is_remote (lamindb.setup.core.InstanceSettings property) is_reserved() (lamindb.UPath method) is_sheet (lamindb.Record property) is_socket() (lamindb.UPath method) is_symlink() (lamindb.UPath method) is_type (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.ULabel attribute) is_validated (lamindb.curators.core.CatVector property) IsVersioned (class in lamindb.models) iterator() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) iterdir() (lamindb.UPath method) itype (lamindb.Schema attribute) J joinpath() (lamindb.UPath method) joinuri() (lamindb.UPath method) json_values (lamindb.Artifact attribute) (lamindb.Run attribute) JSONField (class in lamindb.base.fields) JsonValue (class in lamindb.models) K keep_artifacts_local (lamindb.setup.core.InstanceSettings property) key (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.Block attribute) (lamindb.Transform attribute) key_to_filepath() (lamindb.setup.core.StorageSettings method) kind (lamindb.Artifact attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) (lamindb.Transform attribute) L label LabelManager (class in lamindb.models) labels (lamindb.Artifact property) lakehouse lamindb module lamindb.base module lamindb.base.dtypes module lamindb.base.fields module lamindb.base.types module lamindb.base.uids module lamindb.base.utils module lamindb.core module lamindb.core.loaders module lamindb.core.storage module lamindb.core.subsettings module lamindb.curators module lamindb.curators.core module lamindb.errors module lamindb.examples module lamindb.examples.cellxgene module lamindb.examples.croissant module lamindb.examples.datasets module lamindb.examples.datasets.mini_immuno module lamindb.examples.mlflow module lamindb.examples.schemas module lamindb.examples.wandb module lamindb.integrations module lamindb.integrations.lightning module lamindb.models module lamindb.setup module lamindb.setup.core module lamindb.setup.errors module lamindb.setup.types module last() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) latest() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) latest_run (lamindb.Transform property) LazyArtifact (class in lamindb.models) lchmod() (lamindb.UPath method) length (bionty.Protein attribute) line_number (lamindb.models.TransformBlock attribute) linked_artifacts (lamindb.Record attribute) linked_by_artifacts (lamindb.Artifact attribute) linked_collections (lamindb.Record attribute) linked_in_records (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) linked_projects (lamindb.Record attribute) linked_records (lamindb.Record attribute) linked_references (lamindb.Record attribute) linked_runs (lamindb.Record attribute) linked_transforms (lamindb.Record attribute) linked_ulabels (lamindb.Record attribute) linked_users (lamindb.Record attribute) ListLike (in module lamindb.base.types) load() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.ArtifactSet method) load_fcs() (in module lamindb.core.loaders) load_h5ad() (in module lamindb.core.loaders) load_h5mu() (in module lamindb.core.loaders) load_html() (in module lamindb.core.loaders) load_image() (in module lamindb.core.loaders) load_json() (in module lamindb.core.loaders) load_svg() (in module lamindb.core.loaders) load_tsv() (in module lamindb.core.loaders) local_filepath() (lamindb.setup.core.StorageSettings method) local_storage (lamindb.core.Settings property) (lamindb.setup.core.InstanceSettings property) logger (in module lamindb.core) login() (in module lamindb.setup) logout() (in module lamindb.setup) lookup() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.JsonValue class method) (lamindb.models.ProjectBlock class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) lstat() (lamindb.UPath method) M mapped() (lamindb.Collection method) (lamindb.models.ArtifactSet method) MappedCollection (class in lamindb.core) match() (lamindb.UPath method) maximal_set (lamindb.Schema attribute) md5 (bionty.Source attribute) members (lamindb.Schema property) (pertdb.CombinationPerturbation property) Meta (bionty.models.HasOntologyId attribute) (bionty.models.HasSource attribute) (lamindb.models.HasType attribute) (lamindb.models.IsVersioned attribute) (lamindb.models.TracksRun attribute) (lamindb.models.TracksUpdates attribute) meta_artifact (lamindb.Collection attribute) migrate (class in lamindb.setup) mini_immuno() (in module lamindb.examples.croissant) minimal_set (lamindb.Schema attribute) MissingContextUID mkdir() (lamindb.UPath method) moa (pertdb.Compound attribute) modified (lamindb.UPath property) module bionty bionty.base bionty.core bionty.models bionty.uids lamindb lamindb.base lamindb.base.dtypes lamindb.base.fields lamindb.base.types lamindb.base.uids lamindb.base.utils lamindb.core lamindb.core.loaders lamindb.core.storage lamindb.core.subsettings lamindb.curators lamindb.curators.core lamindb.errors lamindb.examples lamindb.examples.cellxgene lamindb.examples.croissant lamindb.examples.datasets lamindb.examples.datasets.mini_immuno lamindb.examples.mlflow lamindb.examples.schemas lamindb.examples.wandb lamindb.integrations lamindb.integrations.lightning lamindb.models lamindb.setup lamindb.setup.core lamindb.setup.errors lamindb.setup.types pertdb modules (lamindb.setup.core.InstanceSettings property) ModuleWasntConfigured molformula (pertdb.Compound attribute) molweight (pertdb.Compound attribute) mudata_papalexi21_subset() (in module lamindb.examples.datasets) MuDataCurator (class in lamindb.curators) MultipleObjectsReturned N n_empty (lamindb.models.InspectResult property) n_files (lamindb.Artifact attribute) n_max_records (lamindb.core.subsettings.AnnotationSettings attribute) n_members (lamindb.Schema attribute) n_observations (lamindb.Artifact attribute) n_unique (lamindb.models.InspectResult property) name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Branch attribute) (lamindb.Collection property) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Space attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (lamindb.User attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) non_validated (lamindb.curators.core.DataFrameCatManager property) (lamindb.models.InspectResult property) none() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) NotebookNotSaved NoWriteAccess nullable (lamindb.Feature attribute) O ObjectDoesNotExist obs_names (lamindb.core.storage.AnnDataAccessor property) observation off_target_score (pertdb.GeneticPerturbation attribute) on_target_score (pertdb.GeneticPerturbation attribute) on_train_epoch_end() (lamindb.integrations.lightning.Callback method) on_train_start() (lamindb.integrations.lightning.Callback method) one() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) one_or_none() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) OneToOneField (class in lamindb.base.fields) only() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ontology() (in module bionty.uids) ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (pertdb.Compound attribute) (pertdb.EnvironmentalPerturbation attribute) open() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.models.ArtifactSet method) (lamindb.UPath method) optionals (lamindb.Schema property) order_by() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) ordered (lamindb.models.BasicQuerySet property) (lamindb.models.QuerySet property) ordered_artifacts (lamindb.Collection property) ordered_set (lamindb.Schema attribute) organism (bionty.CellMarker attribute) (bionty.core.Settings property) (bionty.Gene attribute) (bionty.Protein attribute) (bionty.Source attribute) Organism (class in bionty) (class in bionty.base) original_shapes (lamindb.core.MappedCollection property) ORM otype (lamindb.Artifact attribute) (lamindb.Schema attribute) output_artifacts (lamindb.Run attribute) output_collections (lamindb.Run attribute) output_records (lamindb.Run attribute) overwrite_versions (lamindb.Artifact property) owner (lamindb.setup.core.InstanceSettings property) owner() (lamindb.UPath method) P params (lamindb.Run attribute) parent (lamindb.UPath property) parents (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.models.HasOntologyId attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.ULabel attribute) (lamindb.UPath property) (pertdb.Compound attribute) parts (lamindb.UPath property) password (lamindb.setup.core.UserSettings attribute) path (lamindb.Artifact property) (lamindb.models.LazyArtifact property) (lamindb.Storage property) (lamindb.UPath property) paths (lamindb.setup.core.SetupSettings property) Pathway (class in bionty) (class in bionty.base) pathways (pertdb.PerturbationTarget attribute) pertdb module pertdb (lamindb.DB attribute) PertdbDB (class in lamindb.models.query_set) PerturbationTarget (class in pertdb) Phenotype (class in bionty) (class in bionty.base) pk (bionty.models.HasOntologyId property) (bionty.models.HasSource property) (lamindb.models.HasType property) (lamindb.models.IsVersioned property) (lamindb.models.TracksRun property) (lamindb.models.TracksUpdates property) pop() (lamindb.models.SQLRecordList method) PositiveIntegerField (class in lamindb.base.fields) PositiveSmallIntegerField (class in lamindb.base.fields) predecessors (lamindb.Project attribute) (lamindb.Transform attribute) prefetch_related() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) private_django_api (lamindb.setup.core.SetupSettings property) Project (class in lamindb) project (lamindb.core.Context property) Project (lamindb.DB attribute) project (lamindb.models.ProjectBlock attribute) ProjectBlock (class in lamindb.models) projects (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.models.Block attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) Protein (class in bionty) (class in bionty.base) proteins (pertdb.Biologic attribute) (pertdb.PerturbationTarget attribute) protocol (lamindb.UPath property) public() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.models.HasSource class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) pubmed_id (lamindb.Reference attribute) Q query (lamindb.models.BasicQuerySet property) (lamindb.models.QuerySet property) query_children() (bionty.CellLine method) (bionty.CellType method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.models.HasOntologyId method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (pertdb.Compound method) query_features() (lamindb.Feature method) query_parents() (bionty.CellLine method) (bionty.CellType method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.models.HasOntologyId method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (pertdb.Compound method) query_projects() (lamindb.Project method) query_records() (lamindb.Record method) query_references() (lamindb.Reference method) query_schemas() (lamindb.Schema method) query_types() (lamindb.Feature method) (lamindb.models.HasType method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) query_ulabels() (lamindb.ULabel method) QueryManager (class in lamindb.models) QuerySet (class in lamindb.models) R raw() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) read_bytes() (lamindb.UPath method) read_text() (lamindb.UPath method) readlink() (lamindb.UPath method) record Record (class in lamindb) (lamindb.DB attribute) record (lamindb.models.RecordArtifact attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RecordJson attribute) (lamindb.models.RecordProject attribute) (lamindb.models.RecordRecord attribute) (lamindb.models.RecordReference attribute) (lamindb.models.RecordRun attribute) (lamindb.models.RecordULabel attribute) (lamindb.models.RecordUser attribute) (lamindb.setup.core.StorageSettings property) RecordArtifact (class in lamindb.models) RecordBlock (class in lamindb.models) RecordJson (class in lamindb.models) RecordProject (class in lamindb.models) RecordRecord (class in lamindb.models) RecordReference (class in lamindb.models) RecordRun (class in lamindb.models) records (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Transform attribute) RecordULabel (class in lamindb.models) RecordUser (class in lamindb.models) recreated_artifacts (lamindb.Run attribute) recreated_collections (lamindb.Run attribute) recreating_runs (lamindb.Artifact attribute) (lamindb.Collection attribute) Reference (class in lamindb) reference (lamindb.Collection attribute) Reference (lamindb.DB attribute) reference (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) reference_type (lamindb.Collection attribute) (lamindb.Record attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) references (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Transform attribute) refresh_from_db() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.models.HasOntologyId method) (bionty.models.HasSource method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.ArtifactArtifact method) (lamindb.models.ArtifactBlock method) (lamindb.models.BaseSQLRecord method) (lamindb.models.Block method) (lamindb.models.BranchBlock method) (lamindb.models.CollectionBlock method) (lamindb.models.HasType method) (lamindb.models.IsVersioned method) (lamindb.models.JsonValue method) (lamindb.models.ProjectBlock method) (lamindb.models.RecordArtifact method) (lamindb.models.RecordBlock method) (lamindb.models.RecordJson method) (lamindb.models.RecordProject method) (lamindb.models.RecordRecord method) (lamindb.models.RecordReference method) (lamindb.models.RecordRun method) (lamindb.models.RecordULabel method) (lamindb.models.RecordUser method) (lamindb.models.RunBlock method), [1] (lamindb.models.SchemaBlock method) (lamindb.models.SpaceBlock method) (lamindb.models.SQLRecord method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.models.TransformBlock method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) region (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) registry Registry (class in lamindb.models) relative_to() (lamindb.UPath method) remove() (lamindb.models.SchemaOptionals method) (lamindb.models.SQLRecordList method) remove_optional_features() (lamindb.Schema method) remove_synonym() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) remove_values() (lamindb.models.FeatureManager method) rename() (lamindb.UPath method) replace() (lamindb.Artifact method) (lamindb.UPath method) report (lamindb.Run attribute) require_organism() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) resolve() (lamindb.UPath method) resolve_expression() (lamindb.models.BasicQuerySet method) (lamindb.models.QuerySet method) restore() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.Block method) (lamindb.models.JsonValue method) (lamindb.models.SQLRecord method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) reverse() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) rglob() (lamindb.UPath method) rmdir() (lamindb.UPath method) root (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.UPath property) root_as_str (lamindb.setup.core.StorageSettings property) run (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Run (class in lamindb) run (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.core.Context property) Run (lamindb.DB attribute) run (lamindb.Feature attribute) (lamindb.models.ArtifactArtifact attribute) (lamindb.models.JsonValue attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.TracksRun attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) run_id (lamindb.models.TracksRun attribute) RunBlock (class in lamindb.models), [1] runs (lamindb.Artifact attribute) (lamindb.models.JsonValue attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) S samefile() (lamindb.UPath method) sample save() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.models.HasOntologyId method) (bionty.models.HasSource method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Source method) (bionty.Tissue method) (in module lamindb) (lamindb.Artifact method) (lamindb.Branch method) (lamindb.Collection method) (lamindb.Feature method) (lamindb.models.ArtifactArtifact method) (lamindb.models.ArtifactBlock method) (lamindb.models.BaseSQLRecord method) (lamindb.models.Block method) (lamindb.models.BranchBlock method) (lamindb.models.CollectionBlock method) (lamindb.models.HasType method) (lamindb.models.IsVersioned method) (lamindb.models.JsonValue method) (lamindb.models.LazyArtifact method) (lamindb.models.ProjectBlock method) (lamindb.models.RecordArtifact method) (lamindb.models.RecordBlock method) (lamindb.models.RecordJson method) (lamindb.models.RecordProject method) (lamindb.models.RecordRecord method) (lamindb.models.RecordReference method) (lamindb.models.RecordRun method) (lamindb.models.RecordULabel method) (lamindb.models.RecordUser method) (lamindb.models.RunBlock method), [1] (lamindb.models.SchemaBlock method) (lamindb.models.SpaceBlock method) (lamindb.models.SQLRecord method) (lamindb.models.SQLRecordList method) (lamindb.models.TracksRun method) (lamindb.models.TracksUpdates method) (lamindb.models.TransformBlock method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Run method) (lamindb.Schema method) (lamindb.Space method) (lamindb.Storage method) (lamindb.Transform method) (lamindb.ULabel method) (lamindb.User method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) save_artifact() (lamindb.curators.AnnDataCurator method) (lamindb.curators.core.ComponentCurator method) (lamindb.curators.core.Curator method) (lamindb.curators.core.SlotsCurator method) (lamindb.curators.DataFrameCurator method) (lamindb.curators.MuDataCurator method) (lamindb.curators.SpatialDataCurator method) (lamindb.curators.TiledbsomaExperimentCurator method) save_cellxgene_defaults() (in module lamindb.examples.cellxgene) save_mini_immuno_datasets() (in module lamindb.examples.datasets.mini_immuno) save_mlflow_features() (in module lamindb.examples.mlflow) save_tiledbsoma_experiment() (in module lamindb.integrations) save_vitessce_config() (in module lamindb.integrations) save_wandb_features() (in module lamindb.examples.wandb) schema Schema (class in lamindb) schema (lamindb.Artifact attribute) Schema (lamindb.DB attribute) schema (lamindb.models.SchemaBlock attribute) (lamindb.Record attribute) SchemaBlock (class in lamindb.models) SchemaOptionals (class in lamindb.models) schemas (bionty.CellMarker attribute) (bionty.Gene attribute) (bionty.Pathway attribute) (bionty.Protein attribute) (lamindb.Artifact attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Schema attribute) schmidt22_crispra_gws_IFNG() (in module lamindb.examples.datasets) schmidt22_perturbseq() (in module lamindb.examples.datasets) scientific_name (bionty.Organism attribute) search() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.JsonValue class method) (lamindb.models.ProjectBlock class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) search_names (lamindb.core.subsettings.CreationSettings attribute) select_for_update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) select_related() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) sequence (pertdb.GeneticPerturbation attribute) set() (lamindb.models.SchemaOptionals method) set_abbr() (bionty.CellLine method) (bionty.CellMarker method) (bionty.CellType method) (bionty.core.BioRecord method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.Gene method) (bionty.models.BioRecord method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Protein method) (bionty.Tissue method) (lamindb.Feature method) (lamindb.models.CanCurate method) (lamindb.Project method) (lamindb.Record method) (lamindb.Reference method) (lamindb.Schema method) (lamindb.ULabel method) (lamindb.User method) (pertdb.Biologic method) (pertdb.CombinationPerturbation method) (pertdb.Compound method) (pertdb.CompoundPerturbation method) (pertdb.EnvironmentalPerturbation method) (pertdb.GeneticPerturbation method) (pertdb.PerturbationTarget method) set_values() (lamindb.models.FeatureManager method) Settings (class in bionty.core) (class in lamindb.core) settings (in module bionty) (in module bionty.base) (in module lamindb) (in module lamindb.setup) settings_dir (lamindb.setup.core.SetupSettings property) SettingsEnvFileOutdated SetupSettings (class in lamindb.setup.core) shape (lamindb.core.MappedCollection property) show() (lamindb.setup.errors.StorageNotEmpty method) (lamindb.setup.migrate class method) size (lamindb.Artifact attribute) slots (lamindb.curators.AnnDataCurator property) (lamindb.curators.core.SlotsCurator property) (lamindb.curators.DataFrameCurator property) (lamindb.curators.MuDataCurator property) (lamindb.curators.SpatialDataCurator property) (lamindb.curators.TiledbsomaExperimentCurator property) (lamindb.models.FeatureManager property) (lamindb.Schema property) SlotsCurator (class in lamindb.curators.core) slug (lamindb.setup.core.InstanceSettings property) SlugField (class in lamindb.base.fields) SmallIntegerField (class in lamindb.base.fields) smiles (pertdb.Compound attribute) sort() (lamindb.models.SQLRecordList method) source (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.models.HasSource attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) Source (class in bionty) source (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) source() (in module bionty.uids) source_code (lamindb.Transform attribute) source_id (bionty.models.HasSource attribute) source_website (bionty.Source attribute) space (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) Space (class in lamindb) space (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) Space (lamindb.DB attribute) space (lamindb.Feature attribute) (lamindb.models.Block attribute) (lamindb.models.JsonValue attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.SQLRecord attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.SetupSettings property) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) SpaceBlock (class in lamindb.models) spatialdata_blobs() (in module lamindb.examples.datasets) SpatialDataAccessor (class in lamindb.core.storage) SpatialDataCurator (class in lamindb.curators) SQLRecord (class in lamindb.models) SQLRecordList (class in lamindb.models) squash() (lamindb.setup.migrate class method) stable_id (bionty.Gene attribute) standardize() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.curators.core.CatVector method) (lamindb.curators.core.ComponentCurator method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.curators.DataFrameCurator method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate method) (lamindb.models.QuerySet method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) start_date (lamindb.Project attribute) started_at (lamindb.Run attribute) stat() (lamindb.UPath method) StaticReference (class in bionty.core) status (lamindb.Run property) stem (lamindb.UPath property) stem_uid (lamindb.Artifact property) (lamindb.Collection property) (lamindb.models.ArtifactBlock property) (lamindb.models.Block property) (lamindb.models.BranchBlock property) (lamindb.models.CollectionBlock property) (lamindb.models.IsVersioned property) (lamindb.models.ProjectBlock property) (lamindb.models.RecordBlock property) (lamindb.models.RunBlock property), [1] (lamindb.models.SchemaBlock property) (lamindb.models.SpaceBlock property) (lamindb.models.TransformBlock property) (lamindb.Transform property) step() (in module lamindb) Storage (class in lamindb) storage (lamindb.Artifact attribute) (lamindb.core.Settings property) Storage (lamindb.DB attribute) storage (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.SetupSettings property) storage_options (lamindb.UPath property) StorageAlreadyManaged StorageNotEmpty StorageSettings (class in lamindb.setup.core) StorageType (in module lamindb.setup.types) StrField (in module lamindb.base.types) strict_classmethod() (in module lamindb.base.utils) successors (lamindb.Project attribute) (lamindb.Transform attribute) suffix (lamindb.Artifact attribute) (lamindb.UPath property) suffixes (lamindb.UPath property) SUPPORTED_SUFFIXES (in module lamindb.core.loaders) symbol (bionty.Gene attribute) symlink_to() (lamindb.UPath method) sync_git_repo (lamindb.core.Settings property) synchronize_to() (lamindb.UPath method) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) (lamindb.Feature attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) synonyms_mapper (lamindb.models.InspectResult property) T targets (pertdb.Biologic attribute) (pertdb.Compound attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) text (lamindb.Reference attribute) TextField (class in lamindb.base.fields) TiledbsomaExperimentCurator (class in lamindb.curators) TimeField (class in lamindb.base.fields) Tissue (class in bionty) (class in bionty.base) to_artifact() (lamindb.Record method) to_dataframe() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Source class method) (bionty.Tissue class method) (lamindb.Artifact class method) (lamindb.Branch class method) (lamindb.Collection class method) (lamindb.Feature class method) (lamindb.models.ArtifactArtifact class method) (lamindb.models.ArtifactBlock class method) (lamindb.models.BaseSQLRecord class method) (lamindb.models.BasicQuerySet method) (lamindb.models.Block class method) (lamindb.models.BranchBlock class method) (lamindb.models.CollectionBlock class method) (lamindb.models.JsonValue class method) (lamindb.models.ProjectBlock class method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.RecordArtifact class method) (lamindb.models.RecordBlock class method) (lamindb.models.RecordJson class method) (lamindb.models.RecordProject class method) (lamindb.models.RecordRecord class method) (lamindb.models.RecordReference class method) (lamindb.models.RecordRun class method) (lamindb.models.RecordULabel class method) (lamindb.models.RecordUser class method) (lamindb.models.Registry method) (lamindb.models.RunBlock class method), [1] (lamindb.models.SchemaBlock class method) (lamindb.models.SpaceBlock class method) (lamindb.models.SQLRecord class method) (lamindb.models.SQLRecordList method) (lamindb.models.TransformBlock class method) (lamindb.Project class method) (lamindb.Record method) (lamindb.Reference class method) (lamindb.Run class method) (lamindb.Schema class method) (lamindb.Space class method) (lamindb.Storage class method) (lamindb.Transform class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) to_dict() (lamindb.core.storage.AnnDataAccessor method) to_list() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) (lamindb.models.SQLRecordList method) to_memory() (lamindb.core.storage.AnnDataAccessor method) to_url() (lamindb.UPath method) torch_worker_init_fn() (lamindb.core.MappedCollection class method) touch() (lamindb.UPath method) track() (in module lamindb) track_run_inputs (lamindb.core.Settings attribute) TracksRun (class in lamindb.models) TracksUpdates (class in lamindb.models) transform Transform (class in lamindb) transform (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.Context property) Transform (lamindb.DB attribute) transform (lamindb.models.TransformBlock attribute) (lamindb.Run attribute) TransformBlock (class in lamindb.models) TransformKind (in module lamindb.base.types) transforms (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.ULabel attribute) type (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Schema attribute) (lamindb.setup.core.StorageSettings property) (lamindb.Storage attribute) (lamindb.ULabel attribute) (pertdb.Biologic attribute) (pertdb.Compound attribute) (pertdb.GeneticPerturbation attribute) type_is_cloud (lamindb.setup.core.StorageSettings property) U UI ui_url (lamindb.setup.core.InstanceSettings property) uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.core.BioRecord attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.models.BioRecord attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Branch attribute) (lamindb.Collection attribute) (lamindb.core.Context property) (lamindb.Feature attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.setup.core.InstanceSettings property) (lamindb.setup.core.StorageSettings property) (lamindb.setup.core.UserSettings attribute) (lamindb.Space attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) ULabel (class in lamindb) (lamindb.DB attribute) ulabels (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Project attribute) (lamindb.Run attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) union() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) unit (lamindb.Feature attribute) (pertdb.EnvironmentalPerturbation attribute) UnknownStorageLocation unlink() (lamindb.UPath method) UPath (class in lamindb) UPathStr (in module lamindb.base.types) (in module lamindb.setup.types) update() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) update_or_create() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) update_smiles() (pertdb.Compound method) UpdateContext updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.Feature attribute) (lamindb.Project attribute) (lamindb.Record attribute) (lamindb.Reference attribute) (lamindb.Run attribute) (lamindb.Schema attribute) (lamindb.Storage attribute) (lamindb.Transform attribute) (lamindb.ULabel attribute) (lamindb.User attribute) (pertdb.Biologic attribute) (pertdb.CombinationPerturbation attribute) (pertdb.Compound attribute) (pertdb.CompoundPerturbation attribute) (pertdb.EnvironmentalPerturbation attribute) (pertdb.GeneticPerturbation attribute) (pertdb.PerturbationTarget attribute) upload_from() (lamindb.UPath method) url (bionty.Source attribute) (lamindb.Project attribute) (lamindb.Reference attribute) URLField (class in lamindb.base.fields) use_in_migrations (lamindb.models.QueryManager attribute) User (class in lamindb) (lamindb.DB attribute) user (lamindb.setup.core.SetupSettings property) users (lamindb.Artifact attribute) UserSettings (class in lamindb.setup.core) using() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) UUIDField (class in lamindb.base.fields) V valid_features() (in module lamindb.examples.schemas) VALID_SUFFIXES (in module lamindb.core.storage) validate() (bionty.CellLine class method) (bionty.CellMarker class method) (bionty.CellType class method) (bionty.core.BioRecord class method) (bionty.DevelopmentalStage class method) (bionty.Disease class method) (bionty.Ethnicity class method) (bionty.ExperimentalFactor class method) (bionty.Gene class method) (bionty.models.BioRecord class method) (bionty.Organism class method) (bionty.Pathway class method) (bionty.Phenotype class method) (bionty.Protein class method) (bionty.Tissue class method) (lamindb.curators.AnnDataCurator method) (lamindb.curators.core.CatVector method) (lamindb.curators.core.ComponentCurator method) (lamindb.curators.core.Curator method) (lamindb.curators.core.DataFrameCatManager method) (lamindb.curators.core.SlotsCurator method) (lamindb.curators.DataFrameCurator method) (lamindb.curators.MuDataCurator method) (lamindb.curators.SpatialDataCurator method) (lamindb.curators.TiledbsomaExperimentCurator method) (lamindb.Feature class method) (lamindb.models.BasicQuerySet method) (lamindb.models.CanCurate method) (lamindb.models.QuerySet method) (lamindb.Project class method) (lamindb.Record class method) (lamindb.Reference class method) (lamindb.Schema class method) (lamindb.ULabel class method) (lamindb.User class method) (pertdb.Biologic class method) (pertdb.CombinationPerturbation class method) (pertdb.Compound class method) (pertdb.CompoundPerturbation class method) (pertdb.EnvironmentalPerturbation class method) (pertdb.GeneticPerturbation class method) (pertdb.PerturbationTarget class method) validated (lamindb.models.InspectResult property) validated_artifacts (lamindb.Schema attribute) ValidateFields (class in lamindb.models) ValidationError value (lamindb.models.ArtifactArtifact attribute) (lamindb.models.JsonValue attribute) (lamindb.models.RecordArtifact attribute) (lamindb.models.RecordJson attribute) (lamindb.models.RecordProject attribute) (lamindb.models.RecordRecord attribute) (lamindb.models.RecordReference attribute) (lamindb.models.RecordRun attribute) (lamindb.models.RecordULabel attribute) (lamindb.models.RecordUser attribute) (pertdb.EnvironmentalPerturbation attribute) values (lamindb.curators.core.CatVector property) (lamindb.Feature attribute) values() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) values_artifact (lamindb.Record attribute) values_collection (lamindb.Record attribute) values_json (lamindb.Record attribute) values_list() (lamindb.models.BasicQuerySet method) (lamindb.models.QueryManager method) (lamindb.models.QuerySet method) values_project (lamindb.Record attribute) values_record (lamindb.Record attribute) values_reference (lamindb.Record attribute) values_run (lamindb.Record attribute) values_transform (lamindb.Record attribute) values_ulabel (lamindb.Record attribute) values_user (lamindb.Record attribute) var_names (lamindb.core.storage.AnnDataAccessor property) variable vendor (lamindb.setup.core.InstanceSettings property) verbosity (lamindb.core.Settings property) version (bionty.Source attribute) (lamindb.Artifact property) (lamindb.Collection property) (lamindb.core.Context property) (lamindb.models.ArtifactBlock property) (lamindb.models.Block property) (lamindb.models.BranchBlock property) (lamindb.models.CollectionBlock property) (lamindb.models.IsVersioned property) (lamindb.models.ProjectBlock property) (lamindb.models.RecordBlock property) (lamindb.models.RunBlock property), [1] (lamindb.models.SchemaBlock property) (lamindb.models.SpaceBlock property) (lamindb.models.TransformBlock property) (lamindb.Transform property) version_tag (lamindb.Artifact attribute) (lamindb.Collection attribute) (lamindb.models.ArtifactBlock attribute) (lamindb.models.Block attribute) (lamindb.models.BranchBlock attribute) (lamindb.models.CollectionBlock attribute) (lamindb.models.ProjectBlock attribute) (lamindb.models.RecordBlock attribute) (lamindb.models.RunBlock attribute), [1] (lamindb.models.SchemaBlock attribute) (lamindb.models.SpaceBlock attribute) (lamindb.models.TransformBlock attribute) (lamindb.Transform attribute) versions (lamindb.Artifact property) (lamindb.Collection property) (lamindb.models.ArtifactBlock property) (lamindb.models.Block property) (lamindb.models.BranchBlock property) (lamindb.models.CollectionBlock property) (lamindb.models.IsVersioned property) (lamindb.models.ProjectBlock property) (lamindb.models.RecordBlock property) (lamindb.models.RunBlock property), [1] (lamindb.models.SchemaBlock property) (lamindb.models.SpaceBlock property) (lamindb.models.TransformBlock property) (lamindb.Transform property) view() (in module lamindb) view_children() (bionty.CellLine method) (bionty.CellType method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.models.HasOntologyId method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (pertdb.Compound method) view_lineage() (lamindb.Artifact method) (lamindb.Collection method) (lamindb.Transform method) view_parents() (bionty.CellLine method) (bionty.CellType method) (bionty.DevelopmentalStage method) (bionty.Disease method) (bionty.Ethnicity method) (bionty.ExperimentalFactor method) (bionty.models.HasOntologyId method) (bionty.Organism method) (bionty.Pathway method) (bionty.Phenotype method) (bionty.Tissue method) (lamindb.models.HasParents method) (lamindb.Record method) (lamindb.ULabel method) (pertdb.Compound method) view_tree() (lamindb.UPath method) W walk() (lamindb.UPath method) with_config() (lamindb.Feature method) with_name() (lamindb.UPath method) with_segments() (lamindb.UPath method) with_stem() (lamindb.UPath method) with_suffix() (lamindb.UPath method) write_bytes() (lamindb.UPath method) write_text() (lamindb.UPath method)