lamindb.examples.cellxgene.save_cxg_defaults

lamindb.examples.cellxgene.save_cxg_defaults()

Save default values of the CELLxGENE schema to the instance.

Adds CELLxGENE specific (control) values that are not available in the ontologies: :rtype: None

  • “normal” Disease

  • “na” Ethnicity

  • “unknown” entries for DevelopmentalStage, Phenotype, and CellType

  • “tissue”, “organoid”, and “cell culture” ULabels (tissue_type)

  • “cell”, “nucleus”, “na” ULabels (suspension_type)