How does search work?¶
Show code cell content
from laminci.db import setup_local_test_postgres
pgurl = setup_local_test_postgres()
!lamin init --name benchmark_search --db {pgurl} --modules bionty --storage ./benchmark_search
→ initialized lamindb: testuser1/benchmark_search
Here we show how to perform text search on SQLRecord and evaluate some search queries for the bionty.CellType ontology.
import lamindb as ln
import bionty as bt
SEARCH_QUERIES_EXACT = (
"t cell",
"stem cell",
"b cell",
"regulatory B cell",
"Be2 cell",
"adipocyte",
)
SEARCH_QUERIES_CONTAINS = ("t cel", "t-cel", "neural", "kidney", "kidne")
TOP_N = 20
bt.CellType.import_source()
→ connected lamindb: testuser1/benchmark_search
ln.Record(name="cat[*_*]").save()
Record(uid='zhkLfPXIjwpKQscQ', is_type=False, name='cat[*_*]', description=None, reference=None, reference_type=None, extra_data=None, branch_id=1, space_id=1, created_by_id=1, type_id=None, schema_id=None, run_id=None, created_at=2026-01-26 16:04:35 UTC, is_locked=False)
Search the registry¶
for query in SEARCH_QUERIES_EXACT:
print("Query:", query)
qs = bt.CellType.search(query)
display(qs.to_dataframe())
assert query.lower() == qs[0].name.lower()
Show code cell output
Query: t cell
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 83 | 22LvKd01YyNA1a | T cell | CL:0000084 | None | T lymphocyte|T-lymphocyte|T-cell | A Type Of Lymphocyte Whose Defining Characteri... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1017 | 5yjQPSaMvOGf1M | CD8-positive, CXCR3-positive, alpha-beta regul... | CL:0001041 | None | CD8-positive, CXCR3-positive, Treg|CD8+CXCR3+ ... | A Cd8-Positive Alpha-Beta-Positive T Cell With... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 898 | 2qIhoZK4GD6DSp | CD8-positive, CD25-positive, alpha-beta regula... | CL:0000919 | None | CD8+CD25+ T cell|CD8+CD25+ T(reg)|CD8-positive... | A Cd8-Positive Alpha Beta-Positive T Cell With... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 909 | 5FzW4l9lHDAkuB | CD4-negative, CD8-negative type I NK T cell se... | CL:0000930 | None | CD4-negative, CD8-negative type I NK T-cell se... | A Mature Nk T Cell That Secretes Interleukin-4... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 912 | 7UFMOmjHjOTnYi | type II NK T cell secreting interleukin-4 | CL:0000933 | None | type II NK T-cell secreting interleukin-4|type... | A Type Ii Nk T Cell That Has Been Recently Act... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 919 | 6Kse3GJuxffYEG | mucosal-associated invariant T cell | CL:0000940 | None | mucosal invariant T-lymphocyte|mucosal invaria... | An Alpha-Beta T Cell That Is Found In The Lami... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 908 | 2pwBnFT3qSk8MP | CD4-negative, CD8-negative type I NK T cell se... | CL:0000929 | None | CD4-negative, CD8-negative type I NK T-lymphoc... | A Mature Nk T Cell That Secretes Interferon-Ga... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 892 | 1zkEPMSu03xTEI | effector memory CD8-positive, alpha-beta T cell | CL:0000913 | None | effector CD8-positive, alpha-beta memory T lym... | Cd8-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 899 | ut1VvtNTnZQya8 | CD8-positive, CD28-negative, alpha-beta regula... | CL:0000920 | None | CD8+CD28- Treg|CD8+CD28- T-lymphocyte|CD8+CD28... | Cd8-Positive, Alpha-Beta Positive Regulatory T... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 900 | 5zF2I6dJqswvFs | type I NK T cell | CL:0000921 | None | type I NKT cell|type I NK T-cell|type I NK T-l... | An Alpha-Beta T Cell Expressing Nk Cell Marker... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 911 | rdl67uwfADhv9a | type II NK T cell secreting interferon-gamma | CL:0000932 | None | type II NK T-lymphocyte secreting interferon-g... | A Type Ii Nk T Cell That Has Been Recently Act... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 777 | 1xUOm7V2IVecUL | CD8-positive, alpha-beta regulatory T cell | CL:0000795 | None | CD8+ T(reg)|CD8+ regulatory T cell|CD8+ Treg|C... | A Cd8-Positive, Alpha-Beta T Cell That Regulat... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 906 | hjbsTsgPYJJs6C | CD4-positive type I NK T cell secreting interl... | CL:0000927 | None | CD4-positive type I NK T cell secreting IL-4|C... | A Mature Nk T Cell That Predominantly Secretes... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 905 | 3oNvdpFXNfiJEv | CD4-positive type I NK T cell secreting interf... | CL:0000926 | None | CD4-positive type I NK T cell secreting IFN-ga... | A Mature Nk T Cell That Secretes Interferon-Ga... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 794 | 3muVF5BnzDoLL3 | mature NK T cell | CL:0000814 | None | mature natural killer T-lymphocyte|mature natu... | A Mature Alpha-Beta T Cell Of A Distinct Linea... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 883 | 3jz6b7gZyUKI6F | central memory CD4-positive, alpha-beta T cell | CL:0000904 | None | central CD4-positive, alpha-beta memory T-lymp... | Cd4-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 884 | 4ZpcwVPJMM3Rh2 | effector memory CD4-positive, alpha-beta T cell | CL:0000905 | None | effector CD4-positive, alpha-beta memory T-cel... | Cd4-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 886 | 7SLcmrYh30S1vu | central memory CD8-positive, alpha-beta T cell | CL:0000907 | None | central CD8-positive, alpha-beta memory T-lymp... | Cd8-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 780 | 1HuNn2EPaZnqWk | gamma-delta T cell | CL:0000798 | None | gammadelta T cell|gamma-delta T-lymphocyte|gam... | A T Cell That Expresses A Gamma-Delta T Cell R... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1479 | 2OTzqBTMlYe5n3 | mature T cell | CL:0002419 | None | CD3e-positive T cell|mature T-cell | A T Cell That Expresses A T Cell Receptor Comp... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: stem cell
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 35 | jxDD8ajDw4Dgy6 | stem cell | CL:0000034 | None | animal stem cell | A Relatively Undifferentiated Cell That Retain... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2354 | 1n840sKHbgZiJ5 | stem cell of epidermis | CL:1000428 | None | epidermal stem cell | A Somatic Stem Cell That Is Part Of The Epider... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1099 | 2WPBsduLHuXawk | short term hematopoietic stem cell | CL:0002033 | None | ST stem cell|ST-HSC | A Hematopoietic Stem Cell Capable Of Rapid Rep... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1965 | 66xlGEYmK4AaD8 | intestinal crypt stem cell of large intestine | CL:0009016 | None | stem cell of large intestine crypt of Lieberkuhn | An Intestinal Stem Cell That Is Located In The... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1977 | 5aMQ7VXCNJW12E | intestinal crypt stem cell of appendix | CL:0009028 | None | stem cell of intestinal crypt of Lieberkuhn of... | An Intestinal Crypt Stem Cell That Is Located ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2010 | 1J46d5xBRonmUh | intestinal crypt stem cell of anorectum | CL:0009061 | None | anorectum intestinal crypt stem cell | An Intestinal Crypt Stem Cell That Is Located ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1628 | tgRXGHjWA1BrID | mesenchymal stem cell of adipose tissue | CL:0002570 | None | mesenchymal stem cell of adipose | A Mesenchymal Stem Cell Of Adipose Tissue. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1596 | 4cuSaXq3cFZYrV | amnion mesenchymal stem cell | CL:0002537 | None | amniotic membrane stem cell | A Mesenchymal Stem Cell Of The Amnion Membrane. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1003 | 5NOO2SHFlHlsDz | CD34-positive, CD38-negative hematopoietic ste... | CL:0001024 | None | CD133-positive hematopoietic stem cell | Cd133-Positive Hematopoietic Stem Cell Is A He... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 48 | 5AU7hMOah3RHnw | multi fate stem cell | CL:0000048 | None | multipotent cell|multifate stem cell|multi-fat... | A Stem Cell That Can Give Rise To Multiple Lin... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 52 | 6Z8jsYOXlkry3m | totipotent stem cell | CL:0000052 | None | totipotential stem cell | A Stem Cell From Which All Cells Of The Body C... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 37 | 5xUfhXf0NeydSB | epithelial fate stem cell | CL:0000036 | None | epithelial stem cell | A Somatic Stem Cell That Is Committed To An Ep... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 38 | 2U8xapxuL7VEqb | hematopoietic stem cell | CL:0000037 | None | hemopoietic stem cell|blood forming stem cell | A Stem Cell From Which All Cells Of The Lympho... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1100 | fQaazBGVZcPb1D | long term hematopoietic stem cell | CL:0002034 | None | LT stem cell|LT-HSC | A Hematopoietic Stem Cell With Long Term Self ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1966 | 5S7LEcUjID2v5H | intestinal crypt stem cell of small intestine | CL:0009017 | None | stem cell of small intestine crypt of Lieberkuhn | An Intestinal Stem Cell That Is Located In The... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 987 | 1yjJyVS8mldMgu | Kit and Sca1-positive hematopoietic stem cell | CL:0001008 | None | Sca1-positive hematopoietic stem cell|LSK stem... | A Hematopoietic Stem Cell That Has Plasma Memb... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 15 | 3dsBAMM1Lc4nK3 | germ line stem cell | CL:0000014 | None | germline stem cell | A Stem Cell That Is The Precursor Of Gametes. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1311 | ibFnx5LAgxhgMF | intestinal crypt stem cell | CL:0002250 | None | stem cell of intestinal crypt of Lieberkuhn | A Stem Cell Located In Epithelium The Based Of... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 36 | 58RHatFbSPuaeh | single fate stem cell | CL:0000035 | None | unipotent stem cell|unipotential stem cell | A Stem Cell That Self-Renews As Well As Give R... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2647 | 5r4LUZpdHfsA3b | mesenchymal stem cell of abdominal adipose tissue | CL:2000080 | None | mesenchymal stem cell of abdominal adipose | Any Mesenchymal Stem Cell Of Adipose Tissue Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: b cell
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 231 | ryEtgi1yGtAcX2 | B cell | CL:0000236 | None | B-cell|B-lymphocyte|B lymphocyte | A Lymphocyte Of B Lineage That Is Capable Of B... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 938 | 7JU5AZLF4fKPgS | T2 B cell | CL:0000959 | None | T2 B lymphocyte|T2 B-cell|T2 B-lymphocyte|tran... | A Transitional Stage B Cell That Has The Pheno... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 949 | 3tAsGFFsRBaxUh | unswitched memory B cell | CL:0000970 | None | unswitched memory B-cell|unswitched memory B l... | An Unswitched Memory B Cell Is A Memory B Cell... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 950 | 5QR8GcfHxVUrzv | IgM memory B cell | CL:0000971 | None | memory IgM B cell|IgM memory B-cell|memory IgM... | An Igm Memory B Cell Is An Unswitched Memory B... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 927 | vUMLrFZL4VMCAw | IgE memory B cell | CL:0000948 | None | IgE memory B lymphocyte|IgE memory B-lymphocyt... | A Class Switched Memory B Cell That Expresses ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 937 | 3YZGNlzSuPVwds | T1 B cell | CL:0000958 | None | T1 B-lymphocyte|T1 B-cell|transitional stage 1... | A Transitional Stage B Cell That Migrates From... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 952 | 6T4HiL2Kcua4oh | IgA memory B cell | CL:0000973 | None | IgA memory B-lymphocyte|IgA memory B-cell|memo... | A Class Switched Memory B Cell That Expresses ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 943 | 5C2KpHBh6xUaOT | Bm2' B cell | CL:0000964 | None | Bm2' B-cell|Bm2-prime B cell|Bm2-prime B-lymph... | A Germinal Center B Cell That Founds A Germina... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 798 | 75GaqGOIq0khhF | transitional stage B cell | CL:0000818 | None | transitional stage B-lymphocyte|transitional s... | An Immature B Cell Of An Intermediate Stage Be... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 823 | 2EhFTUoZOldFSq | follicular B cell | CL:0000843 | None | follicular B lymphocyte|Fo B-cell|Fo B cell|fo... | A Resting Mature B Cell That Has The Phenotype... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 801 | 26E9jKKt6KbGDT | B-1b B cell | CL:0000821 | None | B-1b B lymphocyte|B1b B cell|B1b B-lymphocyte|... | A B-1 B Cell That Has The Phenotype Cd5-Negati... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 825 | 2rco39P1EPNgJJ | marginal zone B cell of spleen | CL:0000845 | None | B cell of marginal zone of spleen|marginal zon... | A Mature B Cell That Is Located In The Margina... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 800 | 3fXg2AruasJlU9 | B-1a B cell | CL:0000820 | None | CD5+ B1 cell|B1a B cell|B-1a B-cell|CD5(+) B1 ... | A B-1 B Cell That Has The Phenotype Cd5-Positive. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 799 | 3VMOKHg2maQX2B | B-1 B cell | CL:0000819 | None | B1 cell|B-1 B lymphocyte|B-1 B-lymphocyte|B1 B... | A B Cell Of Distinct Lineage And Surface Marke... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 958 | 74TtdefAnULx0b | IgG memory B cell | CL:0000979 | None | IgG memory B-cell|memory IgG B-cell|memory IgG... | An Igg Memory B Cell Is A Class Switched Memor... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 824 | 4IowPafDTTIP1j | germinal center B cell | CL:0000844 | None | GC B-lymphocyte|GC B lymphocyte|germinal cente... | A Rapidly Cycling Mature B Cell That Has Disti... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 802 | 1jrUVVsTQSo7Nw | B-2 B cell | CL:0000822 | None | B2 B cell|B-2 B-lymphocyte|B-2 B-cell|B2 B-lym... | A Conventional B Cell Subject To Antigenic Sti... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 939 | 6wMDn1pwhWo10K | T3 B cell | CL:0000960 | None | T3 B lymphocyte|transitional stage 3 B cell|An... | A Transitional Stage B Cell That Expresses Sur... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 796 | 6VBn74jEE2JJ0V | immature B cell | CL:0000816 | None | immature B-lymphocyte|immature B lymphocyte|im... | An Immature B Cell Is A B Cell That Has The Ph... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 960 | 6gGCcUx5gYbe3D | double negative memory B cell | CL:0000981 | None | double negative memory B-cell|dn memory B lymp... | A Memory B Cell With The Phenotype Igd-Negativ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: regulatory B cell
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 948 | 5b0DoJIxPM7yqm | regulatory B cell | CL:0000969 | None | B(reg)|Breg|regulatory B-cell|regulatory B-lym... | A Mature B Cell That Has The Phenotype Cd1D-Po... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: Be2 cell
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 923 | 7Hxc3PWUnY0rAr | Be2 cell | CL:0000944 | None | B effector 2 cell | A Be Cell That Facilitates Development Of T-He... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: adipocyte
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 135 | wdLgwUXoz5ZpWT | adipocyte | CL:0000136 | None | adipose cell|fat cell | A Fat-Storing Cell Found Mostly In The Abdomin... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2257 | 6GvX8eJQ1ebJck | epicardial adipocyte | CL:1000309 | None | adipocyte of epicardial fat|epicardial fat cell | An Adipocyte That Is Part Of The Epicardial Fat. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1046 | 3ccnEzNweppW6C | beige adipocyte | CL:0001070 | None | beige/brite adipocyte|beige fat cell|beige bro... | An Adipocyte That Is Beige In Color, Thermogen... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1672 | 5ikCt2mrLbaFU8 | adipocyte of omentum tissue | CL:0002615 | None | omental adipocyte|omental fat cell | An Adipocyte That Is Part Of Omentum Tissue. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2258 | 5KdaaofTodSo5t | adipocyte of epicardial fat of right ventricle | CL:1000310 | None | epicardial adipocyte of right ventricle|epicar... | An Adipocyte That Is Part Of The Epicardial Fa... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1674 | 4ruvHG7ANcP9Mt | adipocyte of breast | CL:0002617 | None | fat cell of breast|breast adipocyte | An Adipocyte That Is Part Of The Breast. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2259 | 3zeirA0GQcvqmM | adipocyte of epicardial fat of left ventricle | CL:1000311 | None | epicardial adipocyte of left ventricle|epicard... | An Adipocyte That Is Part Of The Epicardial Fa... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1673 | 5IngQdBqaYOFN9 | perirenal adipocyte | CL:0002616 | None | perirenal fat cell|perirenal adipocyte cell | An Adipocyte Of Perirenal Fat Tissue. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1393 | 12Qj99kXREJMNS | neural crest derived adipocyte | CL:0002333 | None | None | An Adipocyte Derived From A Neural Crest Cell. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 439 | 34sV4lgFZ5jUwo | white adipocyte | CL:0000448 | None | white adipose cell | An Adipocyte With Light Coloration And Few Mit... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1580 | 17EZdnrzsDJvlS | subcutaneous adipocyte | CL:0002521 | None | subcutaneous fat cell | An Adipocyte That Is Part Of Subcutaneous Adip... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2543 | 6bv1KRQrE0w9hj | obsolete breast adipocyte | CL:1001583 | None | None | Obsolete: Adipocytes Found In The Subcutaneous... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1395 | 8dEt6lpwvkHD71 | brown preadipocyte | CL:0002335 | None | None | A Preadipocyte That Is Capable Of Differentiat... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 440 | 1tWDTF2O7ETukE | brown adipocyte | CL:0000449 | None | brown fat cell|brown adipose cell | A Cell From The Thermogenic Form Of Adipose Ti... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1637 | 4PFgXW99Qx5Jwg | omentum preadipocyte | CL:0002579 | None | None | A Preadipocyte That Is Part Of An Omentum. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1636 | 1f8VN83lsmJea6 | mesenteric preadipocyte | CL:0002578 | None | None | A Preadipocyte Found In Mesenteric Tissue. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1638 | 2ulPN3RoXKL1WU | preadipocyte of the breast | CL:0002580 | None | None | A Preadipocyte That Is Part Of The Breast. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1639 | 4jbSQ8Dfq13Ocf | perirenal preadipocyte | CL:0002581 | None | None | A Preadipocyte That Is Part Of A Perirenal Fat... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1640 | 3WK2FeBDrRje98 | visceral preadipocyte | CL:0002582 | None | None | A Preadipocyte That Is Part Of Visceral Tissue. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1641 | 2Bn2LN0BiEhgIx | subcutaneous preadipocyte | CL:0002583 | None | None | A Preadipocyte That Is Part Of Subcutaneous Ti... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
for query in SEARCH_QUERIES_CONTAINS:
print("Query:", query)
qs = bt.CellType.search(query)
display(qs.to_dataframe())
top_record = qs[0]
query = query.lower()
assert query in top_record.name.lower() or query in top_record.synonyms.lower()
Show code cell output
Query: t cel
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 83 | 22LvKd01YyNA1a | T cell | CL:0000084 | None | T lymphocyte|T-lymphocyte|T-cell | A Type Of Lymphocyte Whose Defining Characteri... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1017 | 5yjQPSaMvOGf1M | CD8-positive, CXCR3-positive, alpha-beta regul... | CL:0001041 | None | CD8-positive, CXCR3-positive, Treg|CD8+CXCR3+ ... | A Cd8-Positive Alpha-Beta-Positive T Cell With... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 908 | 2pwBnFT3qSk8MP | CD4-negative, CD8-negative type I NK T cell se... | CL:0000929 | None | CD4-negative, CD8-negative type I NK T-lymphoc... | A Mature Nk T Cell That Secretes Interferon-Ga... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 900 | 5zF2I6dJqswvFs | type I NK T cell | CL:0000921 | None | type I NKT cell|type I NK T-cell|type I NK T-l... | An Alpha-Beta T Cell Expressing Nk Cell Marker... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 906 | hjbsTsgPYJJs6C | CD4-positive type I NK T cell secreting interl... | CL:0000927 | None | CD4-positive type I NK T cell secreting IL-4|C... | A Mature Nk T Cell That Predominantly Secretes... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 919 | 6Kse3GJuxffYEG | mucosal-associated invariant T cell | CL:0000940 | None | mucosal invariant T-lymphocyte|mucosal invaria... | An Alpha-Beta T Cell That Is Found In The Lami... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 909 | 5FzW4l9lHDAkuB | CD4-negative, CD8-negative type I NK T cell se... | CL:0000930 | None | CD4-negative, CD8-negative type I NK T-cell se... | A Mature Nk T Cell That Secretes Interleukin-4... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 892 | 1zkEPMSu03xTEI | effector memory CD8-positive, alpha-beta T cell | CL:0000913 | None | effector CD8-positive, alpha-beta memory T lym... | Cd8-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 899 | ut1VvtNTnZQya8 | CD8-positive, CD28-negative, alpha-beta regula... | CL:0000920 | None | CD8+CD28- Treg|CD8+CD28- T-lymphocyte|CD8+CD28... | Cd8-Positive, Alpha-Beta Positive Regulatory T... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 777 | 1xUOm7V2IVecUL | CD8-positive, alpha-beta regulatory T cell | CL:0000795 | None | CD8+ T(reg)|CD8+ regulatory T cell|CD8+ Treg|C... | A Cd8-Positive, Alpha-Beta T Cell That Regulat... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 911 | rdl67uwfADhv9a | type II NK T cell secreting interferon-gamma | CL:0000932 | None | type II NK T-lymphocyte secreting interferon-g... | A Type Ii Nk T Cell That Has Been Recently Act... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 780 | 1HuNn2EPaZnqWk | gamma-delta T cell | CL:0000798 | None | gammadelta T cell|gamma-delta T-lymphocyte|gam... | A T Cell That Expresses A Gamma-Delta T Cell R... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 905 | 3oNvdpFXNfiJEv | CD4-positive type I NK T cell secreting interf... | CL:0000926 | None | CD4-positive type I NK T cell secreting IFN-ga... | A Mature Nk T Cell That Secretes Interferon-Ga... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 912 | 7UFMOmjHjOTnYi | type II NK T cell secreting interleukin-4 | CL:0000933 | None | type II NK T-cell secreting interleukin-4|type... | A Type Ii Nk T Cell That Has Been Recently Act... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 794 | 3muVF5BnzDoLL3 | mature NK T cell | CL:0000814 | None | mature natural killer T-lymphocyte|mature natu... | A Mature Alpha-Beta T Cell Of A Distinct Linea... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 883 | 3jz6b7gZyUKI6F | central memory CD4-positive, alpha-beta T cell | CL:0000904 | None | central CD4-positive, alpha-beta memory T-lymp... | Cd4-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 884 | 4ZpcwVPJMM3Rh2 | effector memory CD4-positive, alpha-beta T cell | CL:0000905 | None | effector CD4-positive, alpha-beta memory T-cel... | Cd4-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 886 | 7SLcmrYh30S1vu | central memory CD8-positive, alpha-beta T cell | CL:0000907 | None | central CD8-positive, alpha-beta memory T-lymp... | Cd8-Positive, Alpha-Beta Memory T Cell With Th... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 898 | 2qIhoZK4GD6DSp | CD8-positive, CD25-positive, alpha-beta regula... | CL:0000919 | None | CD8+CD25+ T cell|CD8+CD25+ T(reg)|CD8-positive... | A Cd8-Positive Alpha Beta-Positive T Cell With... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1479 | 2OTzqBTMlYe5n3 | mature T cell | CL:0002419 | None | CD3e-positive T cell|mature T-cell | A T Cell That Expresses A T Cell Receptor Comp... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: t-cel
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 83 | 22LvKd01YyNA1a | T cell | CL:0000084 | None | T lymphocyte|T-lymphocyte|T-cell | A Type Of Lymphocyte Whose Defining Characteri... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 893 | 7CdLN14llyM3rT | immature NK T cell | CL:0000914 | None | immature NK T lymphocyte|immature NKT cell|imm... | An Immature Alpha-Beta T-Cell That Express Egr... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 472 | 53tIhlSKeB89pM | mucosal type mast cell | CL:0000485 | None | MCT|T mast cells|MC(T) | Mast Cell Subtype That Contains Only The Serin... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 532 | 5ytbq1dAm6c0dL | T-helper 1 cell | CL:0000545 | None | Th1 T cell|T helper cells type 1|Th1 T-cell|Th... | A Cd4-Positive, Alpha-Beta T Cell That Has The... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 533 | 2UjVV0Nv0R9e4n | T-helper 2 cell | CL:0000546 | None | Th2 cell|Th2 T cell|Th2 T lymphocyte|Th2 T-lym... | A Cd4-Positive, Alpha-Beta T Cell That Has The... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 597 | 15VPL6kOxxemIA | eosinophil progenitor cell | CL:0000611 | None | None | Any Granulocytopoietic Cell That Has Part Some... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 611 | 6IC9NGJEv2Y4TD | CD8-positive, alpha-beta T cell | CL:0000625 | None | CD8-positive, alpha-beta T-cell|CD8-positive, ... | A T Cell Expressing An Alpha-Beta T Cell Recep... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 778 | aRVHACbyKFOTvL | CD8-alpha-beta-positive, alpha-beta intraepith... | CL:0000796 | None | CD8-positive, alpha-beta intraepithelial T lym... | A Alpha-Beta Intraepithelial T Cell Found In T... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 771 | 6By01L04BqiLTW | alpha-beta T cell | CL:0000789 | None | alpha-beta T-cell|alpha-beta T lymphocyte|alph... | A T Cell That Expresses An Alpha-Beta T Cell R... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 772 | 5lSF7slib6UfpD | immature alpha-beta T cell | CL:0000790 | None | immature alpha-beta T lymphocyte|immature alph... | An Alpha-Beta T Cell That Has An Immature Phen... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 773 | 4BEwsp1Qruxeii | mature alpha-beta T cell | CL:0000791 | None | mature alpha-beta T lymphocyte|mature alpha-be... | A Alpha-Beta T Cell That Has A Mature Phenotype. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 774 | 6gNM3N4927KAoH | CD4-positive, CD25-positive, alpha-beta regula... | CL:0000792 | None | CD4-positive, CD25-positive, alpha-beta regula... | A Cd4-Positive, Cd25-Positive, Alpha-Beta T Ce... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 775 | wHU3gybJKK06Ya | CD4-positive, alpha-beta intraepithelial T cell | CL:0000793 | None | CD4-positive, alpha-beta intraepithelial T-cel... | A Cd4-Positive, Alpha-Beta T Cell That Is Foun... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 776 | Mv6woHvOp3imjZ | CD8-positive, alpha-beta cytotoxic T cell | CL:0000794 | None | CD8-positive, alpha-beta cytotoxic T lymphocyt... | A Cd8-Positive, Alpha-Beta T Cell That Is Capa... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 777 | 1xUOm7V2IVecUL | CD8-positive, alpha-beta regulatory T cell | CL:0000795 | None | CD8+ T(reg)|CD8+ regulatory T cell|CD8+ Treg|C... | A Cd8-Positive, Alpha-Beta T Cell That Regulat... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 610 | 4PSMdO3IsR9UI9 | CD4-positive, alpha-beta T cell | CL:0000624 | None | CD4-positive, alpha-beta T-cell|CD4-positive, ... | A Mature Alpha-Beta T Cell That Expresses An A... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 779 | 5CyKE0bS0S19HN | alpha-beta intraepithelial T cell | CL:0000797 | None | alpha-beta intraepithelial T-lymphocyte|alpha-... | A Mature Alpha-Beta T Cell Of The Columnar Epi... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 780 | 1HuNn2EPaZnqWk | gamma-delta T cell | CL:0000798 | None | gammadelta T cell|gamma-delta T-lymphocyte|gam... | A T Cell That Expresses A Gamma-Delta T Cell R... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 781 | 70lHcCNwY7Kxtr | immature gamma-delta T cell | CL:0000799 | None | immature gamma-delta T-cell|immature gamma-del... | A Gamma-Delta T Cell That Has An Immature Phen... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 479 | 531hEapjYxnJRH | CD4-positive helper T cell | CL:0000492 | None | CD4-positive helper T-lymphocyte|CD4-positive ... | A Cd4-Positive, Alpha-Beta T Cell That Coopera... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: neural
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 6 | 2ANSKgCOzdEuf7 | neural crest derived fibroblast | CL:0000005 | None | fibroblast neural crest derived | Any Fibroblast That Is Derived From The Neural... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2640 | 6GETDXmICK9BcY | migratory cardiac neural crest cell | CL:2000073 | None | cardiac neural crest cell | Any Migratory Neural Crest Cell That Is Part O... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 30 | 2K4t7SzlkJ1czf | neural crest derived neuron | CL:0000029 | None | neuron neural crest derived | Any Neuron That Develops From Some Migratory N... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 12 | 3YAM45TD39DReS | migratory trunk neural crest cell | CL:0000011 | None | None | Cell That Is Part Of The Migratory Trunk Neura... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 9 | uzxSEqaxJ2a6cF | migratory cranial neural crest cell | CL:0000008 | None | None | Cell That Is Part Of The Migratory Cranial Neu... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 28 | 3iHAmhkV7tIV4r | smooth muscle cell neural crest derived | CL:0000027 | None | None | A Smooth Muscle Cell Derived From The Neural C... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2107 | 6whcJUgVPp4xI7 | neural progenitor cell | CL:0011020 | None | None | An Undifferentiated Cell Derived From A Neural... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1875 | vcVrFvwFGtnAIw | premigratory neural crest cell | CL:0007004 | None | None | Cell That Is Part Of The Neural Crest Region O... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2104 | 2osXrTI3glwr8l | vagal neural crest cell | CL:0011017 | None | None | Cell That Is Part Of The Vagal Neural Crest Po... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 327 | 17PFT8npqwuudR | migratory neural crest cell | CL:0000333 | None | None | A Cell Derived From The Specialized Ectoderm F... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1393 | 12Qj99kXREJMNS | neural crest derived adipocyte | CL:0002333 | None | None | An Adipocyte Derived From A Neural Crest Cell. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1664 | 2Cgzp1mOEKbBSK | migratory enteric neural crest cell | CL:0002607 | None | None | A Neural Crest Cell That Gives Rise To Cells O... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 47 | 1Fbr1GYriFT0gn | neural stem cell | CL:0000047 | None | NSC|neuronal stem cell | An Undifferentiated Neural Cell That Originate... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1733 | 2700Dq8OtyGWr6 | neural crest derived neuroblast | CL:0002676 | None | None | A Neuroblast Derived From A Neural Crest Cell. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2099 | 1g7Tg3bVS9SwfB | neural crest cell | CL:0011012 | None | None | A Cell Of The Neural Crest. Neural Crest Cells... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 422 | 53iZrx0nC1y4HO | iridophore | CL:0000431 | None | None | A Pigment Cell Derived From The Neural Crest. ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 421 | 2sWB95jz7ujDWW | xanthophore cell | CL:0000430 | None | None | A Pigment Cell Derived From The Neural Crest. ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 332 | iHIaVIeBfYlpKp | glioblast (sensu Vertebrata) | CL:0000339 | None | spongioblast | An Early Neural Cell Developing From The Early... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 331 | 1MiaIeuDD5qBxv | neuroblast (sensu Nematoda and Protostomia) | CL:0000338 | None | None | A Neural Precursor Of The Central Nervous System. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 528 | 5a15kv4Epna7lX | melanoblast | CL:0000541 | None | None | A Cell That Originates From The Neural Crest A... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: kidney
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 2420 | 40ZjMXYx57XExV | kidney nerve cell | CL:1000606 | None | None | Any Neuron That Has Its Soma Located In Some K... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2430 | 4KQPYQmGULYmNQ | kidney interstitial fibrocyte | CL:1000693 | None | None | A Stromal Cell That Infiltrates And Resides In... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2405 | 6uz6J9IuuOIqr6 | kidney cell | CL:1000497 | None | None | A Cell That Is Part Of A Kidney. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2415 | 49gyr9eqapVEL8 | kidney papillary duct principal epithelial cell | CL:1000550 | None | None | Any Kidney Cell That Is Part Of Some Papillary... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2422 | 6L22Q8ykE6t097 | kidney cortex tubule cell | CL:1000615 | None | None | Any Kidney Tubule Cell That Is Part Of Some Re... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2429 | 6WI9ajDnAzceFW | kidney interstitial fibroblast | CL:1000692 | None | None | A Fibroblast That Is Part Of An Interstitial C... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 637 | 6Jre47WqI1wb9t | podocyte | CL:0000653 | None | glomerular visceral epithelial cell|kidney pod... | A Specialized Kidney Epithelial Cell, Containe... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2203 | 5oNUNCyFVitiuz | obsolete kidney collecting duct beta-intercala... | CL:0700009 | None | B-IC|kidney collecting duct intercalated cell ... | Obsolete. A Renal Beta-Intercalated Cell That ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2406 | 4xMzxsTKQSjx7Z | kidney interstitial cell | CL:1000500 | None | None | A Cell That Is Part Of Kidney Interstitium. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2410 | aCd99zbBaNTShV | kidney glomerular epithelial cell | CL:1000510 | None | None | Any Kidney Epithelial Cell That Is Part Of Som... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1577 | 33oeJRC2cxPm6S | kidney epithelial cell | CL:0002518 | None | None | An Epithelial Cell Of The Kidney. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 634 | 2NbSmHfhwaaAc3 | mesangial cell | CL:0000650 | None | kidney mesangial cell | A Cell Type That Encapsulates The Capillaries ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2423 | 5pWp8yD84rT7G0 | kidney outer medulla cell | CL:1000616 | None | None | Any Kidney Medulla Cell That Is Part Of Some O... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2424 | 29Q26GZoRlFTxN | kidney inner medulla cell | CL:1000617 | None | None | Any Kidney Medulla Cell That Is Part Of Some I... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1738 | 47edWu9PY8n3BO | kidney cortical cell | CL:0002681 | None | None | A Cell That Is Part Of A Cortex Of Kidney. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1366 | 35I44SqGrz2X0K | epithelial cell of distal tubule | CL:0002305 | None | kidney distal tubule epithelial cell | An Epithelial Cell Of The Distal Convoluted Tu... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1367 | dKh1IfTuMXeqIj | epithelial cell of proximal tubule | CL:0002306 | None | kidney proximal tubule epithelial cell | An Epithelial Cell Of The Proximal Tubule Of T... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2190 | cCuHwBWzodo3Yc | transitional principal-intercalated cell of ki... | CL:0020015 | None | None | A Transitional Cell Located In The Renal Colle... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 632 | 10kkFFarP7jc17 | kidney granular cell | CL:0000648 | None | JG cell|renin secreting cell | A Smooth Muscle Cell That Synthesizes, Stores,... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2434 | 3GTV51huzUx0xS | kidney resident macrophage | CL:1000698 | None | None | A Tissue-Resident Macrophage That Is Part Of S... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Query: kidne
| uid | name | ontology_id | abbr | synonyms | description | is_locked | created_at | branch_id | space_id | created_by_id | run_id | source_id | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| id | |||||||||||||
| 2420 | 40ZjMXYx57XExV | kidney nerve cell | CL:1000606 | None | None | Any Neuron That Has Its Soma Located In Some K... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2430 | 4KQPYQmGULYmNQ | kidney interstitial fibrocyte | CL:1000693 | None | None | A Stromal Cell That Infiltrates And Resides In... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2405 | 6uz6J9IuuOIqr6 | kidney cell | CL:1000497 | None | None | A Cell That Is Part Of A Kidney. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2415 | 49gyr9eqapVEL8 | kidney papillary duct principal epithelial cell | CL:1000550 | None | None | Any Kidney Cell That Is Part Of Some Papillary... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2422 | 6L22Q8ykE6t097 | kidney cortex tubule cell | CL:1000615 | None | None | Any Kidney Tubule Cell That Is Part Of Some Re... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2429 | 6WI9ajDnAzceFW | kidney interstitial fibroblast | CL:1000692 | None | None | A Fibroblast That Is Part Of An Interstitial C... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 637 | 6Jre47WqI1wb9t | podocyte | CL:0000653 | None | glomerular visceral epithelial cell|kidney pod... | A Specialized Kidney Epithelial Cell, Containe... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2203 | 5oNUNCyFVitiuz | obsolete kidney collecting duct beta-intercala... | CL:0700009 | None | B-IC|kidney collecting duct intercalated cell ... | Obsolete. A Renal Beta-Intercalated Cell That ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2406 | 4xMzxsTKQSjx7Z | kidney interstitial cell | CL:1000500 | None | None | A Cell That Is Part Of Kidney Interstitium. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2410 | aCd99zbBaNTShV | kidney glomerular epithelial cell | CL:1000510 | None | None | Any Kidney Epithelial Cell That Is Part Of Som... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1577 | 33oeJRC2cxPm6S | kidney epithelial cell | CL:0002518 | None | None | An Epithelial Cell Of The Kidney. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 634 | 2NbSmHfhwaaAc3 | mesangial cell | CL:0000650 | None | kidney mesangial cell | A Cell Type That Encapsulates The Capillaries ... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2423 | 5pWp8yD84rT7G0 | kidney outer medulla cell | CL:1000616 | None | None | Any Kidney Medulla Cell That Is Part Of Some O... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2424 | 29Q26GZoRlFTxN | kidney inner medulla cell | CL:1000617 | None | None | Any Kidney Medulla Cell That Is Part Of Some I... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1738 | 47edWu9PY8n3BO | kidney cortical cell | CL:0002681 | None | None | A Cell That Is Part Of A Cortex Of Kidney. | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1366 | 35I44SqGrz2X0K | epithelial cell of distal tubule | CL:0002305 | None | kidney distal tubule epithelial cell | An Epithelial Cell Of The Distal Convoluted Tu... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 1367 | dKh1IfTuMXeqIj | epithelial cell of proximal tubule | CL:0002306 | None | kidney proximal tubule epithelial cell | An Epithelial Cell Of The Proximal Tubule Of T... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2190 | cCuHwBWzodo3Yc | transitional principal-intercalated cell of ki... | CL:0020015 | None | None | A Transitional Cell Located In The Renal Colle... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 632 | 10kkFFarP7jc17 | kidney granular cell | CL:0000648 | None | JG cell|renin secreting cell | A Smooth Muscle Cell That Synthesizes, Stores,... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
| 2434 | 3GTV51huzUx0xS | kidney resident macrophage | CL:1000698 | None | None | A Tissue-Resident Macrophage That Is Part Of S... | False | 2026-01-26 16:04:35.099211+00:00 | 1 | 1 | 1 | None | 17 |
Check escaping of special characters.
assert len(ln.Record.search("cat[")) == 1
assert len(ln.Record.search("*_*")) == 1
Search the public ontology¶
ct_public = bt.CellType.public()
df = ct_public.search("b cell", limit=20)
assert df.iloc[0]["name"] == "B cell"
df
Show code cell output
| name | definition | synonyms | parents | |
|---|---|---|---|---|
| ontology_id | ||||
| CL:0000236 | B cell | A Lymphocyte Of B Lineage That Is Capable Of B... | B-cell|B-lymphocyte|B lymphocyte | [CL:0000945] |
| CL:0000822 | B-2 B cell | A Conventional B Cell Subject To Antigenic Sti... | B2 B cell|B-2 B-lymphocyte|B-2 B-cell|B2 B-lym... | [CL:0000785] |
| CL:0000845 | marginal zone B cell of spleen | A Mature B Cell That Is Located In The Margina... | B cell of marginal zone of spleen|marginal zon... | [CL:2000074, CL:0000785] |
| CL:0000816 | immature B cell | An Immature B Cell Is A B Cell That Has The Ph... | immature B-lymphocyte|immature B lymphocyte|im... | [CL:0001201] |
| CL:0009032 | B cell of appendix | A B Cell That Is Located In A Vermiform Appendix. | B cell of appendix vermiformis|appendix B cell... | [CL:0000236] |
| CL:4033068 | cycling B cell | A(N) B Cell That Is Cycling. | proliferating B cell | [CL:0000236] |
| CL:0001053 | IgD-negative memory B cell | A Memory B Cell That Lacks Expression Of Surfa... | IgD- memory B cell | [CL:0000787] |
| CL:0000843 | follicular B cell | A Resting Mature B Cell That Has The Phenotype... | follicular B lymphocyte|Fo B-cell|Fo B cell|fo... | [CL:0000822] |
| CL:0000821 | B-1b B cell | A B-1 B Cell That Has The Phenotype Cd5-Negati... | B-1b B lymphocyte|B1b B cell|B1b B-lymphocyte|... | [CL:0000819] |
| CL:0000820 | B-1a B cell | A B-1 B Cell That Has The Phenotype Cd5-Positive. | CD5+ B1 cell|B1a B cell|B-1a B-cell|CD5(+) B1 ... | [CL:0000819] |
| CL:0000819 | B-1 B cell | A B Cell Of Distinct Lineage And Surface Marke... | B1 cell|B-1 B lymphocyte|B-1 B-lymphocyte|B1 B... | [CL:0000785] |
| CL:0000948 | IgE memory B cell | A Class Switched Memory B Cell That Expresses ... | IgE memory B lymphocyte|IgE memory B-lymphocyt... | [CL:4052108] |
| CL:0000844 | germinal center B cell | A Rapidly Cycling Mature B Cell That Has Disti... | GC B-lymphocyte|GC B lymphocyte|germinal cente... | [CL:0000785] |
| CL:0000818 | transitional stage B cell | An Immature B Cell Of An Intermediate Stage Be... | transitional stage B-lymphocyte|transitional s... | [CL:0001201] |
| CL:0000979 | IgG memory B cell | An Igg Memory B Cell Is A Class Switched Memor... | IgG memory B-cell|memory IgG B-cell|memory IgG... | [CL:0000972] |
| CL:0000970 | unswitched memory B cell | An Unswitched Memory B Cell Is A Memory B Cell... | unswitched memory B-cell|unswitched memory B l... | [CL:0000787] |
| CL:0000964 | Bm2' B cell | A Germinal Center B Cell That Founds A Germina... | Bm2' B-cell|Bm2-prime B cell|Bm2-prime B-lymph... | [CL:0000844] |
| CL:0000960 | T3 B cell | A Transitional Stage B Cell That Expresses Sur... | T3 B lymphocyte|transitional stage 3 B cell|An... | [CL:0000818] |
| CL:0000959 | T2 B cell | A Transitional Stage B Cell That Has The Pheno... | T2 B lymphocyte|T2 B-cell|T2 B-lymphocyte|tran... | [CL:0000818] |
| CL:0000958 | T1 B cell | A Transitional Stage B Cell That Migrates From... | T1 B-lymphocyte|T1 B-cell|transitional stage 1... | [CL:0000818] |
Show code cell content
!docker stop pgtest && docker rm pgtest
!lamin delete --force benchmark_search
pgtest
pgtest
! delete() does not yet affect your Postgres database at postgresql://postgres:pwd@0.0.0.0:5432/pgtest