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Overview

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How to

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  • Transfer & sync across databases

Use cases

  • Manage agents
    • Target prioritization
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      • Curate AnnData based on the CELLxGENE schema
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      • Standardize and append a dataset
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      • Preprocessing and clustering 3k PBMCs
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      • Train a spatial ML model
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      • Generate single-cell images
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      • Identify autophagy-positive cells
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    • Vitessce: AnnData
    • Vitessce: SpatialData
  • Leverage ontologies
    • CellTypist
    • Gene Ontology (GO)
    • Cell type annotation and pathway analysis
    • RDF export & SPARQL queries

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    • How does search work?
  • Influences
  • Glossary

Manage agents .md¶

Below are four examples of agentic analyses using popular harnesses. They illustrate how LaminDB tracks an agent’s tool authoring and orchestration along with a transcript.

The source and tests for this are on GitHub: laminlabs/lamin-agents

  • Target prioritization
  • Copy-number variation
  • Perturbation modeling
  • Scanpy analysis

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Target prioritization
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